LncRNA-miRNA-mRNA网络分析揭示TDRG1在低级别胶质瘤对癌症进展的促进作用

LncRNA-miRNA-mRNA network analysis reveals the promoting role of TDRG1 in cancer progression of low-grade glioma

  • 摘要:
    目的 探讨竞争性内源性RNA(ceRNA)调控网络是否与低级别胶质瘤(LGG)的进展风险相关,并寻找如TDRG1等潜在的长链非编码RNA(lncRNA)分子标记用于LGG的作用研究和评估。
    方法 使用美国癌症基因组图谱(TCGA)数据库中的530个样本、中国脑胶质瘤基因组图谱(CGGA)的198个样本以及广西医科大学附属肿瘤医院的3个样本的转录组学、基因组学以及临床数据和实验验证,全面分析LGG进展患者的显著差异表达基因(DEGs)。根据DEGs构建lncRNA-微小RNA(miRNA)-信使RNA(mRNA)网络,通过生物信息学方法对候选lncRNA进行功能分析。利用病毒构建高精度C57BL/6J小鼠胶质瘤模型进行体内功能验证。
    结果 共定出35个LGG进展相关差异基因,功能富集于信号肽和免疫通路。差异表达指数与IDH1TP53PTENEGFRCDKN2A突变显著关联(P<0.05)。ceRNA网络分析揭示TDRG1等lncRNA靶向miR-30、miR-513调控胶质瘤进展。生存分析显示miR-30、miR-1254、TDRG1表达上调显著缩短生存期(P<0.05)。RNA测序与qPCR证实TDRG1在LGG中特异性高表达(P<0.05),小鼠模型中TDRG1显著促进胶质瘤生长(P<0.05),表明其在LGG进展中的核心作用。
    结论 TDRG1与LGG的进展密切相关,值得进一步探索其在LGG中的功能及临床应用价值。

     

    Abstract:
    Objective To investigate whether the competitive endogenous RNA (ceRNA) regulatory network is associated with the progression risk of low-grade glioma (LGG), and identify potential long non-coding RNA (lncRNA) biomarkers, such as TDRG1, for functional studies and evaluation in LGG.
    Methods Using transcriptomic, genomic, and clinical data from 530 samples in The Cancer Genome Atlas (TCGA), 198 samples in the Chinese Glioma Genome Atlas (CGGA), and 3 samples from the Guangxi Medical University Cancer Hospital, along with experimental validation, we comprehensively analyzed significantly differentially expressed genes (DEGs) in patients with LGG progression. Based on the DEGs, we constructed an lncRNA-miRNA-messenger RNA (mRNA) network and performed functional analysis of candidate lncRNAs using bioinformatics methods. Subsequently, we employed a virus-based approach to establish a high-precision C57BL/6J mouse glioma model for in vivo functional validation.
    Results A total of 35 progression-related DEGs were identified in LGG and their functions were enriched in signal peptides and immune pathways. The differential expression index was significantly associated with mutations in IDH1, TP53, PTEN, EGFR, and CDKN2A (P < 0.05). The ceRNA network analysis revealed that lncRNAs such as TDRG1 regulated progression of glioma by targeting miR-30 and miR- 513. Survival analysis showed that the up-regulation of miR-30, miR-1254, and TDRG1 significantly shortened the survival time (P < 0.05). RNA sequencing and qPCR confirmed the specific overexpression of TDRG1 in LGG (P < 0.05). In a mouse model, TDRG1 significantly promoted glioma growth (P < 0.05), indicating its core role in LGG progression.
    Conclusion TDRG1 is significantly associated with the progression of LGG, meriting further exploration of its functional and clinical significance in low-grade glioma.

     

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