糖酵解关键基因ME1ALDH3A1调控乳酸通路介导COPD相关免疫失调

The key genes ME1 and ALDH3A1 involved in glycolysis regulate the lactate pathway and mediate COPD related immune dysregulation

  • 摘要:
    目的 利用生物信息学方法探讨糖酵解相关基因在慢性阻塞性肺疾病(COPD)发病过程中的表达及其可能通过影响糖酵解调控乳酸化通路介导COPD中免疫失调的作用。
    方法 在GEO数据库中获取COPD相关数据集GSE20257,对其进行差异基因相关分析及加权基因共表达网络分析(WGCNA),将两者获取的相关基因与糖酵解基因集取交集,筛选出共有差异基因并进行富集分析。采用LASSO和SVM-RFE算法筛选糖酵解关键基因,分亚型后进行GSEA分析。免疫浸润分析评估COPD样本中免疫细胞的浸润程度,并探讨关键基因与免疫细胞的相关性。通过实时荧光定量逆转录聚合酶链式反应(RTqPCR)检测人肺及小鼠肺组织中糖酵解关键基因相对表达量。
    结果 通过WGCNA分析和数据集交集筛选出16个共有差异基因后利用LASSO和SVM-RFE算法最终确定ME1ALDH3A1为关键基因。聚类分析将样本分为两个亚型,亚型间差异基因的GSEA分析显示主要富集在细胞周期、趋化因子信号通路、JAK-STAT信号通路等。与对照组相比,COPD组肺组织中ME1ALDH3A1基因表达显著升高(P<0.05)。慢性烟草烟雾暴露(CS)组小鼠肺组织中ME1ALDH3A1基因表达也较空气组显著上调(P<0.01)。
    结论 糖酵解相关基因ME1ALDH3A1可能通过糖酵解调节乳酸化通路介导COPD的免疫失调。

     

    Abstract:
    Objective To investigate the expression of glycolysis-related genes in the pathogenesis of chronic obstructive pulmonary disease (COPD) utilizing bioinformatics methods and the potential role of these genes in mediating immune dysregulation in COPD through their influence on the glycolysis-controlled lactylation pathway.
    Methods The COPD-related dataset GSE20257 was sourced from the GEO database, followed by differential gene correlation analysis and weighted gene co-expression network analysis (WGCNA). The relevant genes identified from both datasets were intersected with the glycolysis gene set to filter for common differentially expressed genes, which were subsequently subjected to enrichment analysis. Subsequently, key genes involved in glycolysis were identified using the LASSO and SVM-RFE algorithms. After subtyping, GSEA analysis was conducted. An immune infiltration analysis was performed to evaluate the extent of immune cell infiltration in COPD samples and explore the correlation between key genes and immune cells. Finally, the relative expression levels of glycolytic key genes in human and mouse lung tissues were assessed using reverse transcription-quantitative polymerase chain reaction (RT-qPCR).
    Results After screening 16 commonly differentially expressed genes through WGCNA analysis and dataset intersection, ME1 and ALDH3A1 were ultimately identified as key genes using LASSO and SVM-RFE algorithms. Cluster analysis classified the samples into two subtypes, and GSEA analysis of the differentially expressed genes between these subtypes revealed significant enrichment in the cell cycle, chemokine signaling pathway, JAK-STAT signaling pathway, among others. Compared with the control group, the gene expression levels of ME1 and ALDH3A1 in the lung tissue of the COPD group were significantly increased (P < 0.05). Additionally, the gene expression levels of ME1 and ALDH3A1 in the lung tissue of mice in the chronic tobacco smoke exposure (CS) group were also significantly increased compared with those in the air group (P < 0.01).
    Conclusion The glycolysis-related genes ME1 and ALDH3A1 may mediate immune dysregulation in COPD by regulating the lactate pathway through glycolysis.

     

/

返回文章
返回