KIF2C在肝细胞癌中的作用及ceRNA调控网络构建

The role of KIF2C in hepatocellular carcinoma and the construction of ceRNA regulatory network

  • 摘要: 目的:分析驱动蛋白家族成员2C(KIF2C)在肝细胞癌(HCC)中的表达及意义;探索竞争内源性RNA(ceRNA)网络在HCC发展中的潜在作用。方法:利用肿瘤芯片数据库(Oncomine)、肿瘤基因组图谱(TCGA)和基因表达谱交互分析(GEPIA)数据库分析KIF2C 在HCC 中的表达,及其与HCC 的总生存期(OS)、无病生存期(DFS)及病理分级等临床参数的关系;通过RT-qPCR 实验分析KIF2C 在HCC 组织和配对的癌旁组织中的表达;通过细胞功能实验分析干预KIF2C 表达对HCC 细胞增殖、侵袭与迁移的影响;利用STRING 和GeneMANIA 数据库探索与KIF2C 互作的蛋白和基因;使用高通量测序,寻找log2|FC|> 1 条件下的差异基因,并进行GO 与KEGG 富集分析,探索KIF2C 潜在的作用通路;通过共表达分析,筛选互作的RNA后构建ceRNA 调控网络。结果:KIF2C在HCC中显著高表达(P< 0.001);KIF2C表达水平影响HCC患者的生存预后及病理分级(P< 0.05);细胞功能实验表明KIF2C过表达促进HCC细胞的增殖、侵袭与迁移(P< 0.05);有10个蛋白参与KIF2C的蛋白互作;共有20个基因参与KIF2C的基因互作;筛选出3 754个长非编码RNA、7 621个差异表达信使RNA和170个差异表达微小RNA;GO与KEGG 富集分析显示,相关差异基因参与细胞外囊泡、质膜固有成分等功能,且显著富集于p53信号通路、PI3K-Akt信号通路、MAPK信号通路;最后,12个lncRNA和5个miRNA构成了一个ceRNA网络,其中has-miR-181b-5p是关键的miRNA。结论:KIF2C在HCC中显著高表达且提示预后不良,KIF2C过表达促进HCC细胞的增殖、侵袭和迁移活动;获得与KIF2C相关的ceRNA调控网络,其在HCC中发挥重要作用。

     

    Abstract: Objective: To analyze the expression and significance of Kinesin family member 2C(KIF2C) in hepatocellular carcinoma (HCC), and to explore the potential role of competitive endogenous RNA(ceRNA) network in the development of HCC.Methods: Firstly, the tumor on-chip database (Oncomine), The Cancer Genome Atlas(TCGA) and gene expression profile interaction analysis (GEPIA) databases were used to analyze the expression of KIF2C in HCC and its relationship with clinical parameters such as overall sur-vival (OS), disease-free survival (DFS) and pathological grading of HCC.Real-time fluorescence quantitative polymerase chain reaction(RT-qPCR)was used to analyze the expression of KIF2C in HCC tissues and matched paracancerous tissues.Secondly, the effect of interfering with KIF2C expression on HCC cell proliferation, inva-sion and migration was analyzed by cell function experiments.Then, the proteins and genes interacting with KIF2C were explored using STRING and GeneMANIA database.High-throughput sequencing was used to search for differential genes under the condition of log2|FC|> 1, and enrichment analysis of GO and KEGG was carried out to explore the potential pathway of KIF2C.Finally, the interacting RNAs were screened and the ceR-NA regulatory network was constructed through co-expression analysis.Results: KIF2C was highly expressed in HCC (P< 0.001); KIF2C expression level affected the survival, prognosis and pathological grade of HCC pa-tients (P< 0.05); cell function experiments showed that overexpression of KIF2C promoted the proliferation, in-vasion and migration of HCC cells(P< 0.05);there were 10 proteins involved in KIF2C protein interaction; there were 20 genes involved in gene interaction of KIF2C; 3, 754 differentially expressed long non-coding RNA(DEln-cRNA), 7, 621 differentially expressed messengers RNA (DEmRNA) and 170 differentially expressed micro-RNA (DEmiRNA) were screened; GO and KEGG enrichment analysis showed that related differential genes were involved in functions such as extracellular vesicles and intrinsic components of plasma membrane, and were significantly enriched in p53 signaling pathway, PI3K-Akt signaling pathway and MAPK signaling pathway; fi-nally, 12 lncrnas and 5 mirnas formed a ceRNA network, among which has-miR-181b-5p was the key miRNA.Fi-nally, 12 lncRNAs and 5 miRNAs formed a ceRNA network, among which has-miR-181b-5p was the key miR-NA.Conclusion: KIF2C is highly expressed in HCC and suggests a poor prognosis.Overexpression of KIF2C promotes the proliferation, invasion and migration of HCC cells.The ceRNA regulatory network associated with KIF2C is obtained, which plays an important role in HCC.

     

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